How to resolve ERROR yarn.ApplicationMaster: User class threw exception: java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient in Spark-Submit

I got into this Exception today when I submitted my Spark Job on yarn-cluster.

ERROR yarn.ApplicationMaster: User class threw exception: java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346) at org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:117) at org.apache.spark.sql.hive.HiveContext.executionHive$lzycompute(HiveContext.scala:165) at org.apache.spark.sql.hive.HiveContext.executionHive(HiveContext.scala:163) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:360) at org.apache.spark.sql.SQLContext$$anonfun$4.apply(SQLContext.scala:205) at org.apache.spark.sql.SQLContext$$anonfun$4.apply(SQLContext.scala:204) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.IterableLike$class.foreach(IterableLike.scala:72) at scala.collection.AbstractIterable.foreach(Iterable.scala:54) at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:204) at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72) at com.csaa.horf.initialLoad.CasDS.CasDataStore$.main(CasDataStore.scala:32) at com.csaa.horf.initialLoad.CasDS.CasDataStore.main(CasDataStore.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.spark.deploy.yarn.ApplicationMaster$$anon$2.run(ApplicationMaster.scala:486) Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453) at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465) at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340) … 19 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410) … 24 more Caused by: javax.jdo.JDOFatalUserException: Class org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found. NestedThrowables: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701) at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310) at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339) at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248) at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136) at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58) at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59) at org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944) at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171) … 29 more Caused by: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory at java.net.URLClassLoader$1.run(URLClassLoader.java:366) at java.net.URLClassLoader$1.run(URLClassLoader.java:355) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:354) at java.lang.ClassLoader.loadClass(ClassLoader.java:425) at java.lang.ClassLoader.loadClass(ClassLoader.java:358) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:270) at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018) at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016) at java.security.AccessController.doPrivileged(Native Method) at javax.jdo.JDOHelper.forName(JDOHelper.java:2015) at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162) … 48 more

How did i resolve it?

Adding data nucleus jars and hive-site.xml File in the Spark Class Path, resolved this issue.

spark-submit –master yarn-cluster –class com.test.package.program –jars /usr/hdp/2.3.2.0-2950/spark/lib/datanucleus-api-jdo-3.2.6.jar –jars /usr/hdp/2.3.2.0-2950/spark/lib/datanucleus-core-3.2.10.jar –jars /usr/hdp/2.3.2.0-2950/spark/lib/datanucleus-rdbms-3.2.9.jar –files  /etc/hive/conf/hive-site.xml application-jar application.properties

 

 

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